Databases (Crystallography)

Databases Sites:

Homologous Structure Alignment Database (HOMSTRAD) Homologous Structure Alignment Database (HOMSTRAD): is a database of structure-based alignments for homologous protein families. It provides annotated structural alignments in various formats, superimposed structures, links to other databases and the alignment and searching interface to the program FUGUE. (Databases) http://www-cryst.bioc.cam.ac.uk/~homstrad/ Metals Structure Database (CRYSTMET) Metals Structure Database (CRYSTMET): A database of critically evaluated crystallographic data for metals, including alloys, intermetallics and minerals. Contains chemical, crystallographic and bibliographic data together with associated comments regarding experimental details for each stu (Databases) http://www.tothcanada.com/ Biological Macromolecule Crystallization Database (BMCD) Biological Macromolecule Crystallization Database (BMCD): Contains crystal data and the crystallization conditions, which have been compiled from literature. Also contains the NASA Protein Crystal Growth Archive, which includes the crystallization data generated from studies carried out in a microgravity environ (Databases) http://wwwbmcd.nist.gov/bmcd/ The RCSB Protein Data Bank (PDB) The RCSB Protein Data Bank (PDB): Archive of experimentally-determined, biological macromolecule 3-D structures from the Brookhaven National Laboratory. Also includes newsletters and a description of the PDB file format. (Databases) http://www.rcsb.org/pdb/ Crystallography Open Database (COD) Crystallography Open Database (COD): A project accomodating crystal structure atomic coordinates prior to their publication. It is intended to give faster access to the latest structure determinations, openly. (Databases) http://www.crystallography.net Powder Diffraction File (PDF) Powder Diffraction File (PDF): maintained by the International Centre for Diffraction Data (ICDD) (Databases) http://www.icdd.com Peptaibol Database Peptaibol Database: Aims to provide a fully searchable database for the sequences of peptaibols. It deals primarily with naturally-occurring peptides, generally these have a fungal origin. (Databases) http://www.cryst.bbk.ac.uk/peptaibol/welcome.html Heavy Atom Databank (HAD) Heavy Atom Databank (HAD): Information on the preparation and characterisation of heavy-atom derivatives of protein crystals. Also contains information resulting from an analysis of the binding of these heavy-atoms with proteins in the crystal environment. (Databases) http://www.sbg.bio.ic.ac.uk/had/ SDPD-Database SDPD-Database: Structure Determination by Powder Diffraction - Database : methods, tutorials, references and links. (Databases) http://www.cristal.org/iniref.html Metalloprotein Database and Browser (MDB) Metalloprotein Database and Browser (MDB): Contains quantitative information on all the metal-containing sites available from structures in the PDB distribution. Includes search and visualization interfaces. (Databases) http://metallo.scripps.edu/ Nucleic Acid Database (NDB) Nucleic Acid Database (NDB): assembles and distributes structural information about nucleic acids. (Databases) http://ndbserver.rutgers.edu/ Inorganic Crystal Structure Database (ICSD) Inorganic Crystal Structure Database (ICSD): Contains records of all inorganic crystal structures, with atomic coordinates, published since 1913. (Databases) http://www.fiz-informationsdienste.de/en/DB/icsd/ Cambridge Structural Database (CSD) Cambridge Structural Database (CSD): Contains crystal structure information for over 325,000 organic and metal-organic compounds. (Databases) http://www.ccdc.cam.ac.uk/prods/csd/csd.html CSDSymmetry CSDSymmetry: The most complete collation of observed molecular and crystallographic symmetry properties to date. A relational database built using Microsoft Access. (Databases) http://www.ccdc.cam.ac.uk/free_services/csdsymmetry/