Quantitative Genetics (Software)

Quantitative Genetics Sites:

The CompuPed 4.0 Pedigree Program The CompuPed 4.0 Pedigree Program: Extended and reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for Win and Mac. Download a demo or order online. (Quantitative Genetics) http://www.mbfs.com/compuped/ Quantitative Genetics Resources Quantitative Genetics Resources: List of resources with links to programs and notes on a range of subjects including animal and plant breeding, and evolutionary and human genetics. (Quantitative Genetics) http://nitro.biosci.arizona.edu/zbook/book.html DESIRE DESIRE: Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP. (Quantitative Genetics) http://www-personal.une.edu.au/~bkinghor/desire.htm Ivory Tower Software Ivory Tower Software: Genetics and breeding simulation software allows students to breed virtual organisms with 2000 genes. The site gives access to a free demo version of the WIN program. (Quantitative Genetics) http://www.i-tower.com/genetics.htm Animal Breeding & Genetics, Wageningen Animal Breeding & Genetics, Wageningen: Provides programmes in the area of animal breeding including SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW. Free software for WIN. (Quantitative Genetics) http://www.zod.wau.nl/abg/hs/links/software.html DFREML DFREML: Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code. (Quantitative Genetics) http://agbu.une.edu.au/~kmeyer/dfreml.html Genup Genup: Free software to assist learning quantitative genetic concepts (animal breeding) for WIN. (Quantitative Genetics) http://www-personal.une.edu.au/~bkinghor/genup.htm ASReml Cookbook ASReml Cookbook: Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis. Emphasis towards tree breeding. (Quantitative Genetics) http://uncronopio.org/luis/asreml_cookbook.html Finnish Forest Genetics and Tree Breeding Finnish Forest Genetics and Tree Breeding: Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species. (Quantitative Genetics) http://www.metla.fi/info/vlib/forestgen/software.htm Laboratory of Plant Breeding, Wageningen Laboratory of Plant Breeding, Wageningen: Offers free downloadable genetics and plant breeding related software. (Quantitative Genetics) http://www.dpw.wau.nl/pv/ VCE VCE: Groeneveld's Variance Component Estimation software was developed for animal breeding problems. WIN and UNIX versions are free for research use. PEST documentation is also available here. (Quantitative Genetics) http://www.tzv.fal.de/~eg/ Pedigree Viewer Pedigree Viewer: Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data also. Free WIN program. (Quantitative Genetics) http://www-personal.une.edu.au/~bkinghor/pedigree.htm Ignacy Misztal Ignacy Misztal: Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use. (Quantitative Genetics) http://nce.ads.uga.edu/~ignacy/programs.html Grain Crops Breeding Grain Crops Breeding: Access to MQTL (simplified composite QTL mapping), MSIM and GREGOR (genetic simulation) and KIN (kinship coefficients). DOS, UNIX and PASCAL source code is free. From McGill University . (Quantitative Genetics) http://gnome.agrenv.mcgill.ca/ GeneFlow Inc GeneFlow Inc: This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported. (Quantitative Genetics) http://www.geneflowinc.com/ PIGBLUP and BREEDPLAN PIGBLUP and BREEDPLAN: Animal Genetics and Breeding Unit of University of New England, Australia have developed BLUP software for genetic selection of swine and beef cattle. Little information is on this site, so ABRI would have to be contacted. (Quantitative Genetics) http://abri.une.edu.au